Image Analysis Workstations & Software

This a custom made system running Linux Centos 5.4 64-bit with dual Intel i7 chips, 4 GB of RAM, an Nvidia Quadro FX 3450, a 1TB drive with a data partition.

Analysis softwareand installed:

  • DeltaVision SoftWorx
  • FIJI/ImageJ 64bit
  • OpenOffice

The French Family Science Center (FFSC) 64-bit Image Analysis Station (LMCF-FFSC64WS) includes a POGO Velocity bought in April 2015 running Microsoft Windows Professional 64-bit on a dual, quad-core Xeon E5-2640v3 2.6GHz 20MB Cache 8.0GT/s, 128 GB of RAM, a Radeon Radeon R9 290 4GB, an SSD for the OS and 2TB SATA drives in RAID 0.

Levine Science Research Center (LSRC) 64-bit Image Analysis Station 1 (computer name: LMCF-LSRCWS-T76) includes a Dell Precision T7600 running Microsoft Windows 10 Pro 64-bit with an eight-core Xeon E5-2687W chip, 32 GB of RAM, an AMD FirePro W5000 graphics card, a boot drive for the OS and a 3.6TB data drive in RAID 0.

Analysis software installed:

  • SVI Huygens Deconvolution
  • ​MetaMorph Premier
  • FIJI/ImageJ 64bit
  • ​Zeiss Zen lite
  • Leica LAS AF (free version)
  • Microsoft Office 2016

Levine Science Research Center (LSRC) Image Analysis Station-2 (Bio-LMCFPOGO) includes a Pogo Linux custom-made computer running Microsoft Windows 10 Enterprise (64-bit) with Intel Xeon Gold 5222 CPU @2.80GHz, 512 GB of RAM, a NVIDIA GeForce RTX 2080 SUPER graphic card, a SSD boot drive for the OS, and a 10TB hard drive.

Analysis software installed:

  • Imaris (for Cell Biologists Package with Cell Analysis)
  • MetaMorph Premier
  • Leica LAS AF offline
  • FIJI/ImageJ 64bit
  • Zeiss Zen Lite (blue and black versions)
  • Microsoft Office

Workstation in MSRB3 (in MSRB3 4134 Open Workstations area) includes a Dell computer running Microsoft Windows 7 Pro 64-bit with an Intel i7 920 chip, 16 GB of RAM, an Nvidia GeForce GTX 260 graphics card, two data drives.

Analysis software installed:

  • MetaMorph Primier
  • FIJI/ImageJ 64-bit
  • ​Leica LAS AF Lite
  • Zeiss Zen Lite
  • Microsoft Office 2007

The Workstation in Nanaline Duke (Bio-LMCF-POGO) includes a POGO Velocity bought in March 2016 running Microsoft Windows 7 Pro 64-bit with a Dual Xeon E5-2640v3 2.6 GHz, 128 GB RAM,  an AMD Radeon R9 290 4GB graphics card, a 240 GB SSD OS drive and 10 TB hardware RAID data drive.  

The Zeiss Lightsheet Workstation in Nanaline Duke is linked to the Zeiss lightsheet Z.1 microscope and is running Microsoft Windows 7 Pro 64-bit with a dual CPU Xeon E5-2620 v3 @ 2.4Ghz, 128 GB of RAM, an Nvidia Quadro K2200 graphics card, a boot drive for the OS and a 32TB Raid 5 array for temporary lightsheet data storage, viewing, and analysis.

Analysis software installed:

  • Arivis 4D
  • Zeiss Zen lightsheet version
  • FIJI/ImageJ 64bit