Publications
The facility is heavily used by many productive scientists, listed below is some of the output from users of the facility. We appreciate notification of publications that contain data acquired at the facility so we can demonstrate productivity for funding applications. Acknowledgement in papers helps in this way too.Journal covers featuring images acquired at the facility
Representative publications from facilty users (Publications from before 2004)
This list is updated periodically, please email with any appropriate publications you would like listed
Anderson, K.A., Ribar, T.J., Lin, F., Noeldner, P.K., Green, M.F., Muehlbauer, M.J., Witters, L.A., Kemp, B.E. and Means, A.R. (2008) Hypothalamic CaMKK2 contributes to the regulation of energy balance. Cell Metabolism 7:377-388
Bahmanyar, S., Kaplan, D.D., DeLuca, J.G., Giddings, T.H., O’Toole, E.T., Winey, M., Salmon, E.D., Casey, P.J., Nelson,W.J. & Barth, A.I. (2008) â-Catenin is a Nek2 substrate involved in centrosome separation. Genes Develop, 22:91-105.
Banik SSR & Counter CM (2004) Characterization of the interaction of PinX1 with telomerase. J Biol Chem, 279:51745-8.
Barrientos KS*, Kendellen MF*, Freibaum, BD, Armbruster BN, Etheridge KT & Counter CM (2008) Distinct functions of POT1. Mol Cell Biol, in press.
Beane, W. S., E. Voronina, G. M. Wessel, and D. R. McClay (2006) Lineage-specific expansions provide genomic complexity among sea urchin GTPases. Dev. Biol. 300:165-179.
Beane, W.S, J. M. Gross, and D. R. McClay, (2006) RhoA Regulates Initiation of Invagination, but not Convergent Extension, during Sea Urchin Gastrulation. Dev. Biol. 292:213-225.
Bolger TA, Yao, TP. (2005) Intracellular trafficking of histone deacetylase 4 regulates neuronal cell death. J Neurosci. 2005 Oct 12;25(41):9544-53.
Bolger, T.A., Zhao, X., Cohen T.J., Tsai, C-C, and Yao, T.-P. The SCA1 neurodegenerative disorder protein Ataxin1 regulates neuronal survival transcription factor MEF2 J. Biol. Chem. 282(40):29186-92 (2007).
Bollinger, R.R., Barbas, A.S., Bush, E.L., Lin, S.S. & Parker. W. (2007) Biofilms in the large bowel suggest an apparent function of the human vermiform appendix. J. Theoretical Biology. doi:10.1016/j.jtbi.2007.08.032.
Bollinger, R.R., Barbas, A.S., Bush, E.L., Lin, S.S. & Parker. W. (2007) Biofilms in the normal human large bowel: fact rather than fiction. Gut.56: 1481-1482
Bradham, C. A. and D.R. McClay (2006) p38 MAPK in development and cancer. Cell Cycle, 5:824-828.
Bradham, C. A. and McClay, D.R. (2006). p38 MAPK is Essential for Secondary Axis Specification and Patterning in Sea Urchin Embryos. Development. 133:21-32 (Featured on the cover)
Bradham, C.A., and D.R. McClay (2007) Secondary axis specification in the sea urchin. In press
Bradham, C.A., E. Miranda, and D. R. McClay (2004) PI3K Activity is Required for Skeletogenesis in Sea Urchin Embryos. Dev Dyn. 229:713-721
Bradham, C.A., K. R. Foltz, W S. Beane, M. I. Arnone, F Rizzo, J. A. Coffman, A. Mushegian, M. Goel, J. Morales, A-M. Geneviere, F. Lapraz, A. J. Robertson, H. Kelkar, M. Loza-Coll, I. K. Townley, M. Raisch, M. M. Roux, T. Lepage, C. Gache, D. R. McClay, and G. Manning (2006) The Sea Urchin Kinome: A First Look. Dev. Biol. 300:180-193. (Featured on the Cover).
Brady SM, Orlando DA, Lee J-Y, Wang JY, Koch J, Dinneny JR, Mace D, Ohler U, and PN Benfey (2007) A High-Resolution Root Spatiotemporal Map Reveals Dominant Expression Patterns. Science 318: 801-806
Brady SM, Song S, Dhugga KS, Rafalski JA and Benfey PN (2007) Combining expression and comparative evolutionary analysis. The COBRA gene family. Plant Physiol. 143:172-87
Burton, E.A., Oliver, T.N., and Pendergast, A.M. (2005). Abl kinases regulate actin comet tail elongation via an N-WASP-dependent pathway. Mol. Cell. Biol. 25, 8834-8843.
Byrum, C.A. K. Walton, A.J. Robertson, S. Carbonneau, R. Thomason, C.A. Bradham, J.A. Coffman, and D. R. McClay (2006) Protein Tyrosine and Ser-thr phosphatases in the Sea Urchin, Strongylocentrotus purpuratus: Identification and Potential Functions. Dev. Biol. 300:194-218.
Chao, A.T., Jones, W.M. and Bejsovec, A. (2007). The HMG-box transcription factor, Sox-Neuro, acts with Tcf to control Wg/Wnt signaling activity. Development 134: 989-997.
Characterization of a UBC13 kinase in Plasmodium falciparum. Nisha Philip and Timothy A. Haystead. Proc Natl Acad Sci U S A. 2007 May 8;104(19):7845-50
Cohen, T. J., Waddell, D., Barrientos, T., Lu, Z., Feng, G., Cox, G.,Bodine, S., and Yao, T.-P., The histone deacetylase HDAC4 connects neural activity to muscle transcriptional reprogramming J. Biol. Chem. 282(46):3375-33759 (2007).
Cohen, T. Mallory MJ2, Strich R. and Yao, T.-P. The Hos2p/Set3p deacetylase complex signals secretory stress through the Mpk1p cell-integrity pathway. Eukaryotic Cell (In Press).
Croce, J. and McClay, D.R. (2006) Role of the Canonical Wnt Pathway in Early Embryonic Polarity.Seminars in Cell & Developmental Biology. 133:547-557.
Croce, J. C. and D.R. McClay (2007) Evolution of Wnt pathways. In press.
Croce, J. C., S-Y. Wu, C. Byrum, R. Xu, L. Duloquin, A. H. Wikramanayake, C. Gache, D. R. McClay (2006) A genome-wide survey of the evolutionarily conserved Wnt pathways in the sea urchin Strongylocentrotus purpuratus. Dev. Biol. 300:121-131.
Croce, J., Duloquin, L., Lhomond, G.,, McClay, D.R. and Gache, C. (2006). Frizzled5/8 is Required in Secondary Mesenchyme Cells to Initiate Archenteron Invagination during Sea Urchin Development. Development 133:547-557. (Featured on the Cover).
Cui H, Levesque MP, Vernoux T, Jung JW, Paquette AJ, Gallagher KL, Wang JY, Blilou I, Scheres B, Benfey PN. An evolutionarily conserved mechanism delimiting SHR movement defines a single layer of endodermis in plants. (2007) Science 316(5823), 421-5
Dang T, Bao S and Wang XF. (2005) Human Rad9 is required for the activation of S-phase checkpoint and the maintenance of chromosomal stability. Genes Cells 10:287-95.
Dinneny JR, Long TA, Wang JY, Jung JW, Mace D, Pointer S, Barron C, Brady SM, Schiefelbein J and PN Benfey (2008) Cell Identity Mediates the Response of Arabidopsis Roots to Abiotic Stress. Science 320:942-5.
Echarri, A., Lai, M.J., Robinson, M.R., and Pendergast, A.M. (2004). Abl Interactor 1 (Abi-1) Wave-binding and SNARE domains regulate its nucleocytoplasmic shuttling, lamellipodium localization, and Wave-1 levels. Mol. Cell. Biol. 24, 4979-4993.
Fogarty, M.P., Emmenegger, B.A., Grasfeder, L.L., Oliver, T.G. and Wechsler-Reya, R.J. (2007) Fibroblast Growth Factor Blocks Sonic Hedgehog Signaling in Neuronal Precursors and Tumor cells. Proc. Natl. Acad. Sci. 104:2973-8.
Frederick, J.P., Mattiske, D., Wofford, J.A., Drake, L.Y., Chiou, S.T., Hogan, B.L.M., York, J.D. (2005) An essential role for an inositol polyphosphate multikinase, Ipk2, in mouse embryogenesis and second messenger production. Proc Natl Acad Sci U S A, 102, 8454-8459.
Frederick, J.P., Tafari, A.T., Wu, S-M, Megosh, L.C., Chiou, S-T, Irving, R.P and York, J.D. (2008) A role for lithium-inhibited Golgi nucleotidase in skeletal development and sulfonation. PNAS Feature Article IN PRESS.
Freibaum BD & Counter CM (2006) hSnm1B is a novel telomere-associated protein. J Biol Chem, 281:15033-6.
Freibaum BD & Counter CM (2008) The protein hSnm1B is stabilized when bound to the telomere-binding protein TRF2. J Biol Chem, in press.
Fridy, P. C., Otto, J. C., Dollins, D.E., and York, J. D. (2007) Cloning and characterization of human VIP1-like inositol hexakisphosphate and diphosphoinositol pentakisphosphate kinase J. Biol. Chem., 282, 30754-30762 [Epub Aug 9, 2007].
Fujii, M. and York, J.D. A role for rat inositol polyphosphate kinases, rIpk2 and rIpk1, in inositol pentakisphosphate and inositol hexakisphosphate production in mammalian cells. (2005) JBC, 280, 1156-1164. Epub 2004
Gao, Y.-S., Hubbert, C., Lee, Y.-S., Kovacs, J. J., Lu, J., and Yao, T.-P. The microtubule-associated deacetylase HDAC6 regulates growth factor induced actin cytoskeleton remodeling and macropinocytosis. Mol Cell Biol. 27, 8637-8647 (2007).
Graves PR, Winkfield KM, Haystead TA. Regulation of ZIP kinase activity in vitro and in vivo by multi-site phosphorylation.J Biol Chem. 2005 Mar 11;280(10):9363-74.
Grove, M., Demyanenko, G., Echarri, A., Zipfel, P.A., Quiroz, M.E., Rodriguiz, R.M., Playford, M., Martensen, S.A., Robinson, M. R., Wetsel, W.C., Maness, P.F., and Pendergast, A.M. (2004). Abi2-deficient mice exhibit defective cell migration, aberrant dendritic spine morphogenesis and deficits in learning and memory. Mol. Cell. Biol. 24, 10905-10922
Haden DW, Suliman HB, Carraway MS, Welty-Wolf KE, Ali AS, Shitara H, Yonekawa H, Piantadosi CA. Mitochondrial Biogenesis Restores Oxidative Metabolism During Staphylococcus aureus Sepsis. Am J Respir Crit Care Med. 2007 Jun 28
Hagerty L, Weitzel DH, Chambers J, Fortner CN, Brush MH, Loiselle D, Hosoya H, Haystead TA. ROCK1 phosphorylates and activates ZIP kinase. J Biol Chem. 2007 Feb 16;282(7):4884-93.
Hattiangady B, Rao MS, Zaman V, Shetty AK. 2006. Incorporation of embryonic CA3 cell grafts into the adult hippocampus at 4-months after injury: effects of combined neurotrophic supplementation and caspase inhibition. Neuroscience 139:1369-1383.
Hattiangady B, Shetty AK. 2006. Aging does not alter the number or phenotype of putative stem/progenitor cells in the neurogenic region of the hippocampus. Neurobiol Aging.
Hattiangady B, Shuai B, Cai J, Coksaygan T, Rao MS, Shetty AK. 2007. Increased Dentate Neurogenesis After Grafting of Glial Restricted Progenitors or Neural Stem Cells In The Aging Hippocampus. Stem Cells.
Hollins DL, Suliman HB, Piantadosi CA, Carraway MS. Glutathione regulates susceptibility to oxidant-induced mitochondrial DNA damage in human lymphocytes. Free Radic Biol Med. 2006 Apr 1;40(7):1220-6.
Intrinsic and CDK-Dependent Control of Spindle Pole Body Duplication in Budding Yeast. Laura A. Simmons Kovacs, Christine L. Nelson, Steven B. Haase. Molecular Biology of the Cell. advance online publication, 14 May 2008 (DOI 10.1091/mbc.E08-02-0148)
JC Schisler, PT Fueger, DA Babu, HE Hohmeier, JS Tessem, D Lu, TC Becker, B Naziruddin, M Levy, RG Mirmira, & CB Newgard. Stimulation of human and rat islet b-cell proliferation with retention of function by the homeodomain transcription factor Nkx6.1. Mol Cell Biol, 28(10):3465-3476, 2008.
Jones WM and Bejsovec A. (2005) RacGap50C negatively regulates Wingless pathway activity during Drosophila embryonic development. Genetics 169(4) 2075-2086.
Kaplan, D.D, Meigs, T.E., Kelly, P. & Casey, P.J. (2004) A role for â-catenin in establishment of a bipolar mitotic spindle. J. Biol. Chem. 279:10829-10832.
Kawaguchi, Y., Ito, A., Appella, E., and Yao, T.-P. Charge modification at multiple C-terminal lysine residues regulates p53 oligomerization and its nucleus-cytoplasm trafficking. J. Biol. Chem. 281(3):1394-400 (2006)
Kovacs, J.J., Murphy, P. J., Stéphanie Gaillard, Zhao, X., , Wu, J.-T.,Nicchitta, C., Yoshida, M., Toft, D., Pratt, W., and Yao, T.-P. The deacetylase HDAC6 regulates Hsp90 acetylation and chaperone -dependent activation of glucocorticoid receptor. Molecular Cell 18(5) 601-607 (2005)
Lapraz F., E. Rottinger, V. Duboc, R. Range, L. Duloquin, K. Walton, S-Y. Wu, C. Bradham, C. Wittaker, M. Loza, T. Hibino, K. Wilson, A. Poustka, D. R. McClay, L. Angerer, C. Gache, T. Lepage (2006) RTK and TGF-ß signaling pathways in the sea urchin genome. Dev. Biol. 300:132-152
Lee, A., Kessler, J.D., Read, T.A., Kaiser, C., Corbeil, D., Huttner, W.B., Johnson, J.E. and Wechsler-Reya, R.J. (2005) Isolation of neural stem cells from the postnatal cerebellum. Nat. Neurosci. 8:723-9
Lee, Y.-S., Lim, K.-H., Guo, X., Kawaguchi, Y., Gao, Y.-S., Ordentlich, P., Wang, X.F., Counter, C., and Yao, T.-P. The cytoplasmic deacetylase HDAC6 is required for efficient oncogenic tumorigenesis. Cancer Research (In Press)
Lim K-H, Brady DC, Der CJ, Cox AD* & Counter CM* (2008) Aurora-A promotes Ras oncogenesis through phosphorylation and relocalization of RalA. Mol Cell Biol, submitted.
Mace DL, Lee JY, Twigg RW, Colinas J, Benfey PN and Ohler U. (2006) Quantification of transcription factor expression from Arabidopsis images. Bioinformatics. 22(14):e323-31.
Maddala R and Rao VP. (2005) alpha-Crystallin localizes to the leading edges of migrating lens epithelial cells. Experimental Cell Res 306(1):203-1
McClay, D.R, Range, R. and Sherwood, D.R. (2004) The Notch pathway in gastrulation. In “Gastrulation” (CD. Stern Ed) Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY. pp. 539-548
McClay, D.R., Gross, J., Peterson, R. and C. Bradham. (2004) Mechanism of gastrulation in the Sea urchin. In “Gastrulation” (CD. Stern Ed) Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY. pp. 123-138.
Meigs, T.E., Juneja, J., Kaplan, D.D., DeMarco, C.T., Stemmle, L.N. & Casey, P.J. (2005) Selective uncoupling of Gá12 from Rho-mediated signaling. J. Biol. Chem., 280:18049-18055.
Morris DP, Price RR, Smith MP, Lei B, and Schwinn DA. (Oct 2004) Cellular trafficking of human {alpha}1a-adrenergic receptors is continuous and primarily agonist-independent. Mol Pharmacol 66:843-854.
Mulugu, S, Bai, W., Fridy, P, Otto, J.C., Dollins, E.C., Haystead, T.A., Ribeiro, A, and York, J.D. (2007). A conserved family of enzymes that phosphorylate inositol hexakisphosphate. Science, 316, 106-109.
Murphy P.J, Morishima Y, Kovacs J.J, Yao T.-P, and Pratt WB. Regulation of the dynamics of hsp90 action on the glucocorticoid receptor by acetylation/deacetylation of the chaperone. J. Biol. Chem. 280(40):33792-33799 (2005).
Nawy T, Lee JY, Colinas J, Wang JY, Thongrad SC, Malamy JE, Birnbaum K, and Benfey PN. (2005) Transcriptional Profile of the Arabidopsis Root Quiescent Center. Plant Cell 17:1908-1925.
Noble, M. D., J. Romac, Y. Wang, J. Hsu, J. E. Humphrey, and R. A. Liddle. Local disruption of the celiac ganglion inhibits substance P release and ameliorates caerulein-induced pancreatitis in rats. Am. J. Physiol. 291:G128-G134, 2006.
Nose, Y., Kim, B. and Thiele, D.J. (2006). Ctr1 Drives Intestinal Copper Absorption and is Essential for Growth, Iron Metabolism and Neonatal Cardiac Function. Cell Metabolism 4: 235-244.
Nose, Y., Kim, B., Thiele, D.J. (2006) Ctr1 Drives Intestinal Copper Absorption and is Essential for Growth, Iron Metabolism and Neonatal Cardiac Function. Cell Metabolism 4:1-10.
Oliver, T.G., Read, T.A., Kessler, J.D., Mehmeti, A., Wells, J.F., Huynh, T.T., Lin, S.M. and Wechsler-Reya, R.J. (2005) Loss of patched and disruption of granule cell development in a pre-neoplastic stage of medulloblastoma. Development 132:2425-39.
Oliveri, P., K. Walton, E. Davidson and D. R. McClay (2006) Repression of mesodermal fate by foxa, a key endoderm regulator of the sea urchin embryo. Development, 133-4173-4183. (Featured on the Cover).
Otim O, Amore G, Minokawa T, McClay DR, Davidson EH. (2004) SpHnf6, a transcription factor that executes multiple functions in sea urchin embryogenesis. Dev Biol.273:226- 243.
Peralta XG, Toyama Y, Hutson MS, Montague R, Venakides S, Kiehart DP, Edwards GS. Upregulation of forces and morphogenic asymmetries in dorsal closure during Drosophila development. Biophys J. 2007 Apr 1;92(7):2583-96. Epub 2007 Jan 11.
Peterson, RE and McClay DR. (2005) A Fringe-modified Notch signal affects specification of mesoderm and endoderm in the sea urchin embryo. Dev Biol 282:126-37.
Philip N, Haystead TA. Characterization of a UBC13 kinase in Plasmodium falciparum Proc Natl Acad Sci U S A. 2007 May 8;104(19):7845-50.
Piantadosi CA, Suliman HB. Mitochondrial transcription factor A induction by redox activation of nuclear respiratory factor 1. J Biol Chem. 2006 Jan 6;281(1):324-33. Epub 2005 Oct 17.
Plattner, R., Koleske, A.J., Kazlauskas, A., and Pendergast, A.M. (2004). Bidirectional signaling links the Abelson Kinases to the Platelet-Derived Growth Factor Receptor. Mol. Cell. Biol. 24, 2573-2583.
Price, TM, Hansen EH, Oliver T. (2005) Immunofluorescent localization of a novel progesterone receptor(s) in a T47D-Y breast cancer cell line lacking genomic progesterone receptor expression. J Soc Gynecol Investig. 2005 Dec;12(8):610-6.
R. Hardman, S.W. Kullman, D.E. Hinton, Application of in vivo methodologies to investigation of biological structure, function and xenobiotic response in see-through medaka (Oryzias latipes). The Fish Biology Journal MEDAKA 11 (2007) 43-65.
R. Hardman, S.W. Kullman, D.E. Hinton, Non Invasive High Resolution In Vivo Imaging of alpha-naphthisothiocyanate (ANIT) Induced Biliary Toxicity in STII Medaka (Oryzias latipes). Aquatic Toxicology 86 (2008) 20-37.
R.C. Hardman, D.C. Volz, S.W. Kullman, D.E. Hinton, An in vivo look at vertebrate liver architecture: three dimensional reconstructions from medaka (Oryzias latipes), Anat. Rec. 290 (2007) 770-782.
Range R, Venuti J, and McClay DR. (2005) LvGroucho and nuclear ß-catenin functionally compete for Tcf binding to influence activation of the endomesoderm gene regulatory network in the sea urchin embryo. Dev Biol, 279:252-267.
Range, R. C. T. D. Glenn, and D. R. McClay (2008) LvNumb positively influences Notch signaling during secondary mesenchyme specification in the sea urchin embryo.Development 135:2445-2454. (Featured on the cover)
Range, R., J. Venuti, and D.R. McClay (2005) LvGroucho and nuclear ?-catenin functionally compete for Tcf binding to influence activation of the endomesoderm gene regulatory network in the sea urchin embryo. Dev Biol, 279:252-267.
Rao MS, Hattiangady B, Rai KS, Shetty AK. 2007. Strategies for promoting anti-seizure effects of hippocampal fetal cells grafted into the hippocampus of rats exhibiting chronic temporal lobe epilepsy. Neurobiol Dis 27:117-132.
Rao MS, Hattiangady B, Shetty AK. 2006. Fetal hippocampal CA3 cell grafts enriched with FGF-2 and BDNF exhibit robust long-term survival and integration and suppress aberrant mossy fiber sprouting in the injured middle-aged hippocampus. Neurobiol Dis 21:276-290.
Rao MS, Hattiangady B, Shetty AK. 2006. The window and mechanisms of major age-related decline in the production of new neurons within the dentate gyrus of the hippocampus. Aging Cell 5:545-558.
Rees, E., Lee, J. and Thiele, D.J. (2005) Mobilization of Intracellular Copper Stores by the Ctr2 Vacuolar Copper Transporter. J. Biol. Chem. 279: 54221 - 54229.
Rees, E.M. and Thiele, D.J. (2007) Identification of a vacuole-associated metalloreductase and its role in CTR2-mediated intracellular copper mobilization. J. Biol. Chem. 282: 21629-21638.
Roberts, T, M Klein, F Kubke, JM Wild and R. Mooney (2008). Telencephalic neurons monosynaptically link brainstem and forebrain premotor networks necessary for song. J Neurosci 28: 3479-3489.
Robertson, A J., J. Croce, S. Carbonneau, E.Voronina, E. Miranda, D. R. McClay and J. A. Coffman (2006) The genomic underpinnings of apoptosis in S. purpuratus. Dev. Biol. 300:321-334.
Romac, J. M. J., S. McCall, J. E. Humphrey, J. Heo and R. A. Liddle. Pharmacologic disruption of TRPV1-expressing primary sensory neurons but not genetic deletion of TRPV1 protects mice against caerulein-induced pancreatitis. Pancreas 36:394-401, 2008.
Rottinger, E., A. Saudemont, V. Duboc, L. Besnardeau, D.R. McClay and T. Lepage (2007) FGF signals guide migration of mesenchymal cells, control skeletal morphogenesis of the skeleton and regulate gastrulation during sea urchin development. Development 135:353-365
Sandquist, J.C., Swenson, K.I., Demali, K.A., Burridge, K. and Means, A.R. (2006) Rho kinase differentially regulates phosphorylation of nonmuscle myosin II isoforms A and B during cell rounding and migration. J. Biol. Chem. 281:35873-35883.
Sea urchin Consortium. (2006) The sea urchin genome. Science. 314:941-951. (Featured on the Cover)
Seeds, A.M., Sandquist, J.C. Spana, E.P. and York, J.D. A Molecular basis for inositol polyphosphate synthesis in Drosophila melanogaster (2004) JBC, 279, 47222-47232.
Shuen, J.A., Chen, M., Gloss, B., and N. Calakos, 2008. Drd1a-tdTomato transgenic mice for simultaneous visualization of MSNs in the direct and indirect pathways of the basal ganglia. The Journal of Neuroscience, 28(11):2681-5.
Spiegelberg, B.D., dela Cruz, J., Law, T.H. and York, J.D. Alteration of lithium pharmacology through manipulation of phosphoadenosine metabolism (2005) JBC, 280, 5400-5405. Epub 2004.
Stemmle, L.N., Fields, T.A. & Casey, P.J. (2006) The RGS domain of axin selectively interacts with Gá12 but not Gá13. Mol. Pharmacol., 70:1461-1468.
Stevenson-Paulik, J., Bastidas, R.J, Chiou, S.T., Frye, R.A. and York, J.D. (2005) Generation of phytate-free seeds in Arabidopsis through disruption of inositol polyphosphate kinases. PNAS (track II), 102, 12612-12617.
Stevenson-Paulik, J., Chiou, S.T., Frederick, J.P., dela Cruz, J., Seeds, A.M., Otto, J.C. and York, J.D. Inositol Phosphate Metabolomics: Merging Genetic Perturbation with Modernized Radiolabeling Methods (2006) Methods, 39, 112-121.
Suliman HB, Carraway MS, Tatro LG, Piantadosi CA. A new activating role for CO in cardiac mitochondrial biogenesis. J Cell Sci. 2007 Jan 15;120(Pt 2):299-308.
Tanos, B., and Pendergast, A.M. (2006). ABL tyrosine kinase regulates endocytosis of the Epidermal Growth Factor Receptor. J. Biol. Chem. 281, 32714-32723. Online at doi/10.1074/jbc. M603126200.
Tanos, B.E., and Pendergast, A.M. (2007). Abi-1 forms an epidermal growth factor-inducible complex with Cbl: role in receptor endocytosis. Cellular Signaling 19, 1602-1609.
Turski, M. L. and Thiele, D. J. (2007) Drosophila Ctr1A functions as a copper transporter essential for development. J. Biol. Chem. 282: 24017-24026.
Voronina. E., Lopez, M., Juliano, C., Gustafson, E., Song, J., Extavour, C., George. S., Oliveri, P., McClay, D.R. and Wessel, G.M. (2007) Vasa protein expression is restricted to the small micromeres of the sea urchin, but is inducible in other lineages early in development. Dev. Biol. 314:276-286.
Walton, K. D. J. C. Croce, T. D. Glenn, S-Y. Wu, and D. R. McClay (2006) Genomics and expression profiles of the Hedgehog and Notch signaling pathways in sea urchin development. Dev. Biol. 300:153-164. (Featured on the Cover)
Wieman, H.L., J.A. Wofford, J.C. Rathmell. 2007. Cytokine Stimulation Promotes Glucose Uptake via PI3K/Akt Regulation of Glut1 Activity and Trafficking. Mol. Biol. Cell. 18:1437-46.
Wikramanayake, A.H., R. Peterson, J. Chen, L. Huang, D.R. McClay, W.H. Klein (2004) Selective expression of Wnt8 in vegetal cells of the early sea urchin embryo mediates endomesoderm specification in a nuclear beta-catenin-dependent manner. Genesis 39:194-205.
Wooldridge AA, Fortner CN, Lontay B, Akimoto T, Neppl RL, Facemire C, Datto MB, Kwon A, McCook E, Li P, Wang S, Thresher RJ, Miller SE, Perriard JC, Gavin TP, Hickner RC, Coffman TM, Somlyo AV, Yan Z, Haystead TA. Deletion of the PKA/PKG target SMTNL1 promotes an exercise-adapted phenotype in vascular smooth muscle. J Biol Chem. 2008 Apr 25;283(17):11850-9.
Wu, S.-Y., Ferkowicz, M., and D.R. McClay (2007) Ingression of primary mesenchyme cells of the sea urchin embryo: a precisely timed epithelial mesenchymal transition. Birth Defects Research. 81:241-252.
Wu, S-Y, and D.R. McClay, (2007) The Snail Repressor is required for PMC Ingression in Sea Urchin Embryo, Development 134:1061-1070.
Wu, S-Y., Y-P. Yang, and D.R. McClay (2008) Twist is an essential regulator of the skeletogenic gene regulatory network in the sea urchin embryo. Dev. Biol. 319:406-415
Yang, ZJ, Ellis, T, Markant, SL, Read, TA, Kessler, JD, Bourboulas, M, Schüller, U, Machold, R, Fishell, G, Rowitch, DH, Wainwright, BJ and Wechsler-Reya RJ (2008) Medulloblastoma can be Initiated by Deletion of patched in Lineage-Restricted Progenitors or Stem Cells. Cancer Cell. In press.
Yeh, E.S., Lew, B.O., Means, A.R. (2006) The loss of PIN1 deregulates cyclin E and sensitizes MEFs to genomic instability. J. Biol. Chem. 281: 241- 251
Zandy, N.L., Playford, M., and Pendergast, A.M. (2007). Abl Tyrosine Kinases regulate cell-cell adhesion via Rho GTPases. PNAS 104: 17686-17691.
Zandy, N.L., and Pendergast, A.M. (2008). Abl Tyrosine Kinases Modulate Cadherin-dependent Adhesion Upstream and Downstream of Rho Family GTPases. Cell Cycle 74: 444-448.
Zhao, X., Sternsodorf, T., Bolger, T. A., Evans, R. M. and Yao, T.-P. Regulation of MEF2 by class II and class III histone deacetylases mediated lysine modifications. Mol. Cell Biol. 25(19):8456-64 (2005).
Zhao, Y., B.J. Altman, J.L. Coloff, C.E. Herman, S.R. Jacobs, H.L. Wieman, J.A. Wofford, L.N. Dimascio, O. Ilkayeva, A. Kelekar, T. Reya, and J.C. Rathmell. 2007. GSK-3á/â Mediate a Glucose-Sensitive Anti-Apoptotic Signaling Pathway to Stabilize Mcl-1. Mol Cell Biol. 27:4328-39.
Zipfel, P.A., Zhang, W., Quiroz, M., and Pendergast, A.M. (2004). Requirement for Abl kinases in T cell receptor signaling. Current Biology 14, 1222-1231
Zipfel, P.A., Bunnell, S.C., Witherow, D.S., Gu, J.J., Chislock, E.M., Ring, C., and Pendergast, A.M. (2006). Role for the Abi/Wave protein complex in T cell receptor-mediated proliferation and cytoskeletal remodeling. Current Biology 16, 35-46.
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Publications from before 2004